Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.11" 2021-04-20; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/scripts/../juicer -g mm10 -z /Data/DataBases/mm10/mm10_canonic.fa -p /Data/DataBases/mm10/mm10_canonic.chrom.sizes -s DpnII -y /Data/UserData/FairWind/Ya.Cloud/core/pipeline/data/restriction_sites/RestrictionSites_DpnII_mm10.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/Project/SRR8453405/__temp__                                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  236,727,456
 Normal Paired: 231,799,814 (97.92%)
 Chimeric Paired: 11,879 (0.01%)
 Chimeric Ambiguous: 6,216 (0.00%)
 Unmapped: 4,909,547 (2.07%)
 Ligation Motif Present: 54,583 (0.02%)
Alignable (Normal+Chimeric Paired): 231,811,693 (97.92%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2021-09-30T01:42:56,559]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 79,879,461 (33.74%)
PCR Duplicates: 151,932,232 (64.18%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 85,581,343
Intra-fragment Reads: 35,891,853 (15.16% / 44.93%)
Below MAPQ Threshold: 12,714,680 (5.37% / 15.92%)
Hi-C Contacts: 31,272,928 (13.21% / 39.15%)
 Ligation Motif Present: 15,008  (0.01% / 0.02%)
 3' Bias (Long Range): 79% - 21%
 Pair Type %(L-I-O-R): 25% - 24% - 24% - 26%
Inter-chromosomal: 6,775,006  (2.86% / 8.48%)
Intra-chromosomal: 24,497,922  (10.35% / 30.67%)
Short Range (<20Kb): 14,207,869  (6.00% / 17.79%)
Long Range (>20Kb): 10,290,004  (4.35% / 12.88%)